ATCC® 43417™ | Serratia marcescens

Overview

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Quality Control

Assembly Summary
Date Published	October 3, 2023
Length	5,059,825 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (0 Circularized)
N50	5,054,302 nt
%GC	59.68%

Annotations Summary
Number of CDS	4690
Number of Hypothetical Proteins	248
Number of tRNA	91
Number of 5s rRNA	8
Number of 16s rRNA	7
Number of 23s rRNA	7

Input Reads Summary
Oxford Nanopore Read Count	181,906
Oxford Nanopore Median Q Score	13.7
Illumina Read Count	6,905,478
Illumina Mean Coverage Depth	198.908×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	6,905,478
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.81%
Estimated genome contamination	0.45%
Illumina depth of coverage	198.908×
ONT depth of coverage	77.25×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions