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  • Liberibacter
  • Liberibacter crescens

Liberibacter crescens (ATCC® BAA-2481™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedSeptember 5, 2023
Length1,513,871 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N501,513,871 nt
%GC35.36%
Organism Summary
NameATCC® BAA-2481™
IsolationCultivated mountain papaya (Babaco)
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS1,325
Number of Hypothetical Proteins491
Number of tRNA48
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count24,361
Oxford Nanopore Median Q Score25
Illumina Read Count8,578,194
Illumina Mean Coverage Depth791.209×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads8,578,194
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage791.209×
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