ATCC® BAA-3294™ | Pseudomonas aeruginosa

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-3294™
Strain Alias	847726
Isolation	Respiratory bronchoalveolar lavage
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	December 13, 2024
Length	7,160,791 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (2 Circularized)
N50	7,020,352 nt
%GC	65.87%

Annotations Summary
Number of CDS	6776
Number of Hypothetical Proteins	815
Number of tRNA	64
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	62,022
Oxford Nanopore Median Q Score	35
Illumina Read Count	11,686,888
Illumina Mean Coverage Depth	240.715×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	11,686,888
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.68%
Estimated genome contamination	0.11%
Illumina depth of coverage	240.715×
ONT depth of coverage	30.126×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions