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  • Vibrio campbellii

Vibrio campbellii (ATCC® BAA-1121™)

Overview
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Related Genomes
Quality Control
Assembly Summary
Date PublishedMay 29, 2020
Length6,077,333 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (2 Circularized)
Assembly LevelChromosome
N503,784,306 nt
%GC45.44%
Organism Summary
NameATCC® BAA-1121™
GenotypeluxN::Cm, luxS::Tn5Kan
IsolationSensor mutant derived from Vibrio campbellii strain BB120 (ATCC BAA-1116)
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS5,605
Number of Hypothetical Proteins2,484
Number of tRNA131
Number of 5s rRNA13
Number of 16s rRNA12
Number of 23s rRNA12
Input Reads Summary
Oxford Nanopore Read Count312,973
Oxford Nanopore Median Q Score25
Illumina Read Count4,363,305
Illumina Mean Coverage Depth154.195×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,363,305
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.73%
PassedEstimated genome contamination0.09%
PassedAverage depth of coverage154.195×
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