- Vibrio harveyi group
- Vibrio campbellii
Vibrio campbellii (ATCC® BAA-1121™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | May 29, 2020 |
| Length | 6,077,333 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (2 Circularized) |
| Assembly Level | Chromosome |
| N50 | 3,784,306 nt |
| %GC | 45.44% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-1121™ |
| Genotype | luxN::Cm, luxS::Tn5Kan |
| Isolation | Sensor mutant derived from Vibrio campbellii strain BB120 (ATCC BAA-1116) |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 5,605 |
| Number of Hypothetical Proteins | 2,484 |
| Number of tRNA | 131 |
| Number of 5s rRNA | 13 |
| Number of 16s rRNA | 12 |
| Number of 23s rRNA | 12 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 312,973 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 4,363,305 |
| Illumina Mean Coverage Depth | 154.195× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,363,305
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.73%
PassedEstimated genome contamination0.09%
PassedAverage depth of coverage154.195×
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