Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 29, 2021 |
| Length | 1,774,117 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| Assembly Level | Complete |
| N50 | 1,774,117 nt |
| %GC | 32.95% |
| Organism Summary | |
|---|---|
| Name | ATCC® 43000™ |
| Isolation | Marine marsh sediment |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 1,849 |
| Number of Hypothetical Proteins | 1,078 |
| Number of tRNA | 34 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 293,902 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 8,550,998 |
| Illumina Mean Coverage Depth | 440.383× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,550,998
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.5%
PassedEstimated genome contamination0%
PassedAverage depth of coverage440.383×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline