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  • Methanococcus
  • Methanococcus maripaludis

Methanococcus maripaludis (ATCC® 43000™)

Overview
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Quality Control
Assembly Summary
Date PublishedOctober 29, 2021
Length1,774,117 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N501,774,117 nt
%GC32.95%
Organism Summary
NameATCC® 43000™
IsolationMarine marsh sediment
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS1,849
Number of Hypothetical Proteins1,078
Number of tRNA34
Number of 5s rRNA4
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count293,902
Oxford Nanopore Median Q Score25
Illumina Read Count8,550,998
Illumina Mean Coverage Depth440.383×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads8,550,998
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.5%
PassedEstimated genome contamination0%
PassedAverage depth of coverage440.383×
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