ATCC® MYA-1108™ | Saccharomyces cerevisiae

Overview

Annotations

Related Genomes

Quality Control

Assembly Summary
Date Published	November 26, 2024
Length	12,279,206 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	23
Assembly Level	Scaffold
N50	781,693 nt
%GC	38.15%

Organism Summary
Name	ATCC® MYA-1108™
Genotype	MATa trp1-289 leu2-3 leu2-112 ura3-52 his3-delta1MATa trp1-289 leu2-3 leu2-112 ura3-52 his3-delta1
Biosafety Level	1
Type Strain	No

Annotations Summary
Number of BUSCO Annotations	734

Input Reads Summary
Oxford Nanopore Read Count	1,011,303
Oxford Nanopore Median Q Score	26
Illumina Read Count	28,297,958
Illumina Mean Coverage Depth	337.781×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads28,297,958

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.01%

BUSCO Quality Control

Metrics assessing the assembly quality (from BUSCO).

2 out of 2 passed

PassedEstimated genome completeness96.8%

PassedAverage depth of coverage337.781×

Notes

This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Saccharomyces cerevisiae (ATCC® MYA-1108™)