ATCC® BAA-2629™ | Nonomuraea thermotolerans

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	September 25, 2024
Length	7,797,651 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	10 (0 Circularized)
N50	1,566,593 nt
%GC	71.88%

Organism Summary
Name	ATCC® BAA-2629™
Isolation	Solid compost
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	7267
Number of Hypothetical Proteins	1112
Number of tRNA	58
Number of 5s rRNA	4
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	47,589
Oxford Nanopore Median Q Score	25
Illumina Read Count	13,316,422
Illumina Mean Coverage Depth	248.932×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads13,316,422

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.05%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness100%

PassedEstimated genome contamination1.13%

PassedAverage depth of coverage248.932×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Nonomuraea thermotolerans (ATCC® BAA-2629™)