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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 17899™ |
| Strain Alias | D [5110, DSM 180, SMG 180] |
| Isolation | Ditch water |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | April 5, 2023 |
| Length | 3,671,133 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 3,528,940 nt |
| %GC | 64.19% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3278 |
| Number of Hypothetical Proteins | 361 |
| Number of tRNA | 51 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 32,285 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 8,463,831 |
| Illumina Mean Coverage Depth | 310.003× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 8,463,831 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.74% |
| Estimated genome contamination | 0.63% |
| Average depth of coverage | 310.003× |
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