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Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 1, 2023 |
| Length | 35,339 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 14 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 4,286 nt |
| %GC | 56.4% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1097™ |
| Isolation | Presumed from conjunctival scrapings from child with trachoma. |
| Tags | |
| Biosafety Level | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 2,542,024 |
| Illumina Mean Coverage Depth | 4,869.872× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Notes
This virus was manually assembled and curated, due to its automated assembly not meeting our reference-based quality filtering. See our technical documentation for further details: http://docs.onecodex.com/en/articles/3996287-genome-assembly
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