ATCC® BAA-847™ | Helicobacter cinaedi

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-847™
Strain Alias	CDC DO148 [U. Washington #165, CLO-1A]
Isolation	Isolated by KK Holmes, University of Washington, 1980-1983
Tags	Type Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	September 16, 2025
Length	2,280,695 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	2,280,695 nt
%GC	38.19%

Annotations Summary
Number of CDS	2372
Number of Hypothetical Proteins	654
Number of tRNA	40
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	378,190
Oxford Nanopore Median Q Score	37
Illumina Read Count	2,159,370
Illumina Mean Coverage Depth	232.924×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control
Number of trimmed reads	2,159,370
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.14%
Estimated genome contamination	0%
Illumina depth of coverage	232.924×
ONT depth of coverage	1,111.041×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions