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- Staphylococcus capitis
- Staphylococcus capitis subsp. capitis
Staphylococcus capitis subsp. capitis (ATCC® 27841™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 5, 2024 |
| Length | 2,453,003 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| Assembly Level | Complete |
| N50 | 2,450,674 nt |
| %GC | 32.88% |
| Organism Summary | |
|---|---|
| Name | ATCC® 27841™ |
| Isolation | Skin |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,347 |
| Number of Hypothetical Proteins | 210 |
| Number of tRNA | 62 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 288,446 |
| Oxford Nanopore Median Q Score | 27 |
| Illumina Read Count | 8,611,706 |
| Illumina Mean Coverage Depth | 516.044× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,611,706
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.02%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.81%
PassedEstimated genome contamination0.06%
PassedAverage depth of coverage516.044×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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