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- Pseudomonas chlororaphis group
- Pseudomonas protegens
Pseudomonas protegens (ATCC® BAA-477™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 7,063,752 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 19 (0 Circularized) |
| Assembly Level | Chromosome |
| N50 | 1,505,615 nt |
| %GC | 63.3% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-477™ |
| Isolation | Root surface of cotton; isolated by Charles Howell |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 6,311 |
| Number of Hypothetical Proteins | 641 |
| Number of tRNA | 70 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 158,833 |
| Oxford Nanopore Median Q Score | 14 |
| Illumina Read Count | 4,712,039 |
| Illumina Mean Coverage Depth | 130.924× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,712,039
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.34%
PassedEstimated genome contamination1.15%
PassedAverage depth of coverage130.924×
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