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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-477™ |
| Strain Alias | Pf-5 |
| Isolation | Root surface of cotton; isolated by Charles Howell |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 7,063,752 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 19 (0 Circularized) |
| N50 | 1,505,615 nt |
| %GC | 63.3% |
| Annotations Summary | |
|---|---|
| Number of CDS | 6319 |
| Number of Hypothetical Proteins | 619 |
| Number of tRNA | 70 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 158,833 |
| Oxford Nanopore Median Q Score | 14 |
| Illumina Read Count | 4,712,039 |
| Illumina Mean Coverage Depth | 130.924× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,712,039 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.34% |
| Estimated genome contamination | 1.15% |
| Illumina depth of coverage | 130.924× |
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