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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 3626™ |
| Strain Alias | Strain 34. Type b [A.J. Wilsdon type B, strain 34, L.S. McClung 1955, NCIB 10691] |
| Genotype | The presence of cpa, cpb, etx, cpb2, and pfoA genes was confirmed by PCR. |
| Isolation | Intestinal contents of lamb |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | December 23, 2021 |
| Length | 3,814,204 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (4 Circularized) |
| N50 | 3,499,256 nt |
| %GC | 28.12% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3434 |
| Number of Hypothetical Proteins | 613 |
| Number of tRNA | 94 |
| Number of 5s rRNA | 10 |
| Number of 16s rRNA | 10 |
| Number of 23s rRNA | 10 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 714,857 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 4,477,788 |
| Illumina Mean Coverage Depth | 272.869× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,477,788 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.19% |
| Estimated genome contamination | 0.09% |
| Average depth of coverage | 272.869× |
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