ATCC® 27651™ | Fructilactobacillus sanfranciscensis

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	1,305,818 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	993,884 nt
%GC	35.11%

Annotations Summary
Number of CDS	1317
Number of Hypothetical Proteins	149
Number of tRNA	59
Number of 5s rRNA	7
Number of 16s rRNA	7
Number of 23s rRNA	7

Input Reads Summary
Oxford Nanopore Read Count	110,665
Oxford Nanopore Median Q Score	27
Illumina Read Count	9,853,470
Illumina Mean Coverage Depth	1,110.972×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	9,853,470
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.38%
Estimated genome contamination	0.78%
Illumina depth of coverage	1,110.972×
ONT depth of coverage	465.682×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions