Organism Summary | |
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Catalog Number | ATCC® 27651™ |
Strain Alias | L-12 [DSM 20451, NRRL B-3934] |
Isolation | San Francisco sourdough |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | February 21, 2025 |
Length | 1,305,818 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (1 Circularized) |
N50 | 993,884 nt |
%GC | 35.11% |
Annotations Summary | |
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Number of CDS | 1317 |
Number of Hypothetical Proteins | 149 |
Number of tRNA | 59 |
Number of 5s rRNA | 7 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 110,665 |
Oxford Nanopore Median Q Score | 27 |
Illumina Read Count | 9,853,470 |
Illumina Mean Coverage Depth | 1,110.972× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,853,470 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.38% |
Estimated genome contamination | 0.78% |
Average depth of coverage | 1,110.972× |
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions