ATCC® 39116™ | Amycolatopsis tucumanensis

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	8,450,181 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (1 Circularized)
N50	4,513,216 nt
%GC	71.87%

Annotations Summary
Number of CDS	8247
Number of Hypothetical Proteins	986
Number of tRNA	51
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	114,293
Oxford Nanopore Median Q Score	34
Illumina Read Count	9,429,662
Illumina Mean Coverage Depth	164.486×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	9,429,662
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.06%
Estimated genome contamination	0.17%
Illumina depth of coverage	164.486×
ONT depth of coverage	64.804×

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions