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  • Acidocella
  • Acidocella aminolytica

Acidocella aminolytica (ATCC® 51361™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 8, 2023
Length4,080,528 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs6 (All Circularized)
Assembly LevelComplete
N503,871,351 nt
%GC58.93%
Organism Summary
NameATCC® 51361™
IsolationAcidic
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS3,977
Number of Hypothetical Proteins1,779
Number of tRNA53
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count146,966
Oxford Nanopore Median Q Score23
Illumina Read Count9,852,014
Illumina Mean Coverage Depth336.189×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads9,852,014
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness98.51%
PassedEstimated genome contamination0.03%
PassedAverage depth of coverage336.189×
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