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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 64™ |
| Strain Alias | AMC 797 [ATCC 4517, ATCC 8248, CCM 2116, CCRC 10607, CCUG 7421, CFBP 4222, CIP 52.83, DSMZ 25, HAMBI 1882, IAM 12455, IFO 15654, JCM 2496, LMG 16000, LMG 6931, NCCB 48016, NCCB 75013, NCFB 1763, NCIB 8213, NCIB 9367, NCTC 2613, NCTC 6357, NRS 111, NRS 314 |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | October 31, 2023 |
| Length | 5,377,930 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| N50 | 5,290,626 nt |
| %GC | 40.66% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4815 |
| Number of Hypothetical Proteins | 826 |
| Number of tRNA | 111 |
| Number of 5s rRNA | 11 |
| Number of 16s rRNA | 11 |
| Number of 23s rRNA | 11 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 261,776 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 11,906,536 |
| Illumina Mean Coverage Depth | 328.009× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 11,906,536 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0% |
| Average depth of coverage | 328.009× |
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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