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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 31, 2023 |
| Length | 5,377,930 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| N50 | 5,290,626 nt |
| %GC | 40.66% |
| Organism Summary | |
|---|---|
| Name | ATCC® 64™ |
| Strain Name | AMC 797 [ATCC 4517, ATCC 8248, CCM 2116, CCRC 10607, CCUG 7421, CFBP 4222, CIP 52.83, DSMZ 25, HAMBI 1882, IAM 12455, IFO 15654, JCM 2496, LMG 16000, LMG 6931, NCCB 48016, NCCB 75013, NCFB 1763, NCIB 8213, NCIB 9367, NCTC 2613, NCTC 6357, NRS 111, NRS 314 |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4815 |
| Number of Hypothetical Proteins | 826 |
| Number of tRNA | 111 |
| Number of 5s rRNA | 11 |
| Number of 16s rRNA | 11 |
| Number of 23s rRNA | 11 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 261,776 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 11,906,536 |
| Illumina Mean Coverage Depth | 328.009× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads11,906,536
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage328.009×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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