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  • Caulobacter
  • Caulobacter vibrioides

Caulobacter vibrioides (ATCC® 15252™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedSeptember 29, 2020
Length4,123,751 nt
Sequencing TechnologyIllumina + Oxford Nanopore
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N504,123,751 nt
%GC67.22%
Organism Summary
NameATCC® 15252™
IsolationTap water
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS3,817
Number of Hypothetical Proteins1,895
Number of tRNA60
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count118,201
Oxford Nanopore Median Q Score22
Illumina Read Count5,501,219
Illumina Mean Coverage Depth225.879×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,501,219
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.68%
PassedEstimated genome contamination0%
PassedAverage depth of coverage225.879×
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