Organism Summary | |
---|---|
Catalog Number | ATCC® MYA-833™ |
Isolation | Malus domestica 'Fiesta' from Lawn Road |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | June 3, 2024 |
Length | 52,530,939 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 110 (0 Circularized) |
N50 | 925,382 nt |
%GC | 47.26% |
Annotations Summary | |
---|---|
Number of BUSCO Annotations | 744 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 1,037,344 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 72,066,072 |
Illumina Mean Coverage Depth | 196.017× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 72,066,072 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
---|---|
Estimated genome completeness | 98.1% |
Average depth of coverage | 196.017× |
This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions