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Overview
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-1991™ |
| Isolation | Derived from 6 passages of 2019-nCoV/Hong Kong/VM20001061/2020 which was originally isolated from a nasopharyngeal aspirate and throat swab from an adult male patient January 22, 2020 in Hong Kong. This item has 7 sequence variants (6 with single nucleotide polymorphisms and one 27 nucleotide deletion in the ORF6 region) compared to the original clinical isolate sequence. |
| Biosafety Level | 3 |
| Assembly Summary | |
|---|---|
| Date Published | May 18, 2020 |
| Length | 29,946 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 29,946 nt |
| %GC | 37.92% |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 1,271,560 |
| Illumina Mean Coverage Depth | 639.709× |
| Illumina Median Q Score | 38 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
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