As of May 2024, to guarantee the long-term sustainability of the portal and to continue to provide you with reference-quality genomes, we have transitioned the ATCC Genome Portal over to a supporting membership service. Learn more about ATCC supporting memberships here.
- Penicillium chrysogenum species complex
- Penicillium chrysogenum
Penicillium chrysogenum (ATCC® 10106™)
Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 33,493,926 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 14 |
| Assembly Level | Scaffold |
| N50 | 2,642,210 nt |
| %GC | 48.81% |
| Organism Summary | |
|---|---|
| Name | ATCC® 10106™ |
| Isolation | Cheese |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 754 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 345,867 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 26,984,097 |
| Illumina Mean Coverage Depth | 179.489× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads26,984,097
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness99.08%
PassedAverage depth of coverage179.489×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline