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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 201702™ |
| Strain Alias | NIHT 38-0143-27 [IFM 47284] |
| Isolation | Blood of HIV+ male, Chiang Rai Hospital; isolated June 13, 1995 |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | June 3, 2024 |
| Length | 28,339,190 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 11 (0 Circularized) |
| N50 | 3,801,858 nt |
| %GC | 46.71% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 750 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 207,719 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 108,238,984 |
| Illumina Mean Coverage Depth | 562.632× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 108,238,984 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 98.9% |
| Average depth of coverage | 562.632× |
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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