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  • Flavobacterium
  • Flavobacterium columnare

Flavobacterium columnare (ATCC® 49512™)

Overview
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Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 31, 2022
Length3,210,034 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N503,210,034 nt
%GC31.68%
Organism Summary
NameATCC® 49512™
IsolationSkin lesion of a brown trout fry, Salmo trutta
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS2,716
Number of Hypothetical Proteins1,551
Number of tRNA91
Number of 5s rRNA12
Number of 16s rRNA12
Number of 23s rRNA12
Input Reads Summary
Oxford Nanopore Read Count393,822
Oxford Nanopore Median Q Score25
Illumina Read Count12,430,706
Illumina Mean Coverage Depth544.89×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads12,430,706
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.65%
PassedEstimated genome contamination0.18%
PassedAverage depth of coverage544.89×
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