ATCC® BAA-52™ | Lacticaseibacillus paracasei subsp paracasei

Overview

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Quality Control

Assembly Summary
Date Published	March 5, 2024
Length	2,998,562 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (1 Circularized)
N50	1,795,708 nt
%GC	46.36%

Annotations Summary
Number of CDS	2824
Number of Hypothetical Proteins	352
Number of tRNA	52
Number of 5s rRNA	2
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	150,741
Oxford Nanopore Median Q Score	26
Illumina Read Count	11,601,038
Illumina Mean Coverage Depth	574.82×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control
Number of trimmed reads	11,601,038
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	89.47%
Estimated genome contamination	7.33%
Illumina depth of coverage	574.82×
ONT depth of coverage	265.537×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions