ATCC® BAA-52™ | Lacticaseibacillus paracasei subsp. paracasei

Overview

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Related Genomes

Quality Control

Assembly Summary
Date Published	March 5, 2024
Length	2,998,562 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (1 Circularized)
Assembly Level	Chromosome
N50	1,795,708 nt
%GC	46.36%

Organism Summary
Name	ATCC® BAA-52™
Biosafety Level	1
Type Strain	No

Annotations Summary
Number of CDS	2,810
Number of Hypothetical Proteins	356
Number of tRNA	52
Number of 5s rRNA	2
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	150,741
Oxford Nanopore Median Q Score	26
Illumina Read Count	11,601,038
Illumina Mean Coverage Depth	574.82×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads11,601,038

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.91%

PassedEstimated genome contamination0%

PassedAverage depth of coverage574.82×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Lacticaseibacillus paracasei subsp. paracasei (ATCC® BAA-52™)