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  • Escherichia coli

Escherichia coli (ATCC® 11775™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedSeptember 29, 2020
Length5,036,297 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N504,904,921 nt
%GC50.65%
Organism Summary
NameATCC® 11775™
IsolationUrine
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS4,708
Number of Hypothetical Proteins1,166
Number of tRNA88
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count83,411
Oxford Nanopore Median Q Score25
Illumina Read Count11,877,036
Illumina Mean Coverage Depth325.666×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads11,877,036
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.97%
PassedEstimated genome contamination0.39%
PassedAverage depth of coverage325.666×
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