ATCC® MYA-3435™ | Candida sp.

Overview

Annotations

Related Genomes

Quality Control

Assembly Summary
Date Published	December 13, 2024
Length	13,601,584 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	9
Assembly Level	Scaffold
N50	4,144,983 nt
%GC	57.43%

Organism Summary
Name	ATCC® MYA-3435™
Isolation	Isolated May 18, 2004
Biosafety Level	1
Type Strain	No

Annotations Summary
Number of BUSCO Annotations	751

Input Reads Summary
Oxford Nanopore Read Count	224,544
Oxford Nanopore Median Q Score	24
Illumina Read Count	56,153,026
Illumina Mean Coverage Depth	611.765×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads56,153,026

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

BUSCO Quality Control

Metrics assessing the assembly quality (from BUSCO).

2 out of 2 passed

PassedEstimated genome completeness99.1%

PassedAverage depth of coverage611.765×

Notes

This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Candida sp. (ATCC® MYA-3435™)