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  • Gordonia
  • Gordonia bronchialis

Gordonia bronchialis (ATCC® 25592™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 26, 2020
Length5,334,379 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs7 (1 Circularized)
Assembly LevelChromosome
N505,209,108 nt
%GC67.04%
Organism Summary
NameATCC® 25592™
IsolationSputum of woman with cavitary disease of both upper lungs
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS5,062
Number of Hypothetical Proteins2,587
Number of tRNA52
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count250,543
Oxford Nanopore Median Q Score21
Illumina Read Count3,642,159
Illumina Mean Coverage Depth123.058×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,642,159
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.06%
PassedAverage depth of coverage123.058×
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