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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 35951™ |
| Strain Alias | UQM 2507 [ACM 2507, CIP 106842, DSM 3183, EY 4220, HAMBI 2081, IFO 15649, JCM 10396, NCIMB 12085] |
| Isolation | Swimming pool water |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | April 29, 2024 |
| Length | 4,106,919 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (3 Circularized) |
| N50 | 3,695,972 nt |
| %GC | 63.36% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3953 |
| Number of Hypothetical Proteins | 598 |
| Number of tRNA | 44 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 68,898 |
| Oxford Nanopore Median Q Score | 32 |
| Illumina Read Count | 10,664,988 |
| Illumina Mean Coverage Depth | 384.521× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 10,664,988 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.54% |
| Estimated genome contamination | 1.02% |
| Illumina depth of coverage | 384.521× |
| ONT depth of coverage | 97.412× |
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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