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  • Acidocella
  • Acidocella aminolytica

Acidocella aminolytica (ATCC® 51362™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedSeptember 5, 2023
Length4,385,599 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs5 (All Circularized)
Assembly LevelComplete
N503,904,693 nt
%GC58.9%
Organism Summary
NameATCC® 51362™
IsolationAcidic
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS4,291
Number of Hypothetical Proteins2,016
Number of tRNA54
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count417,132
Oxford Nanopore Median Q Score23
Illumina Read Count9,864,684
Illumina Mean Coverage Depth313.036×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads9,864,684
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness99%
PassedEstimated genome contamination1.51%
PassedAverage depth of coverage313.036×
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