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  • Vibrio campbellii

Vibrio campbellii (ATCC® BAA-1116™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 27, 2019
Length6,067,462 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (All Circularized)
Assembly LevelComplete
N503,776,209 nt
%GC45.43%
Organism Summary
NameATCC® BAA-1116™
IsolationMarine
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS5,616
Number of Hypothetical Proteins2,493
Number of tRNA118
Number of 5s rRNA13
Number of 16s rRNA12
Number of 23s rRNA12
Input Reads Summary
Oxford Nanopore Read Count89,808
Oxford Nanopore Median Q Score16
Illumina Read Count4,623,247
Illumina Mean Coverage Depth182.194×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,623,247
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.74%
PassedEstimated genome contamination0.35%
PassedAverage depth of coverage182.194×
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