ATCC® BAA-1653™ | Escherichia coli | ATCC Genome Portal

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Organism Summary
Catalog Number	ATCC® BAA-1653™
Strain Alias	EH1534
Isolation	Stool from outbreak of verocytotoxin-producing Escherichia coli associated with consumption of ice cream produced at a farm in Belgium; isolated by D. Pierard
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	February 25, 2023
Length	5,742,488 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	9 (2 Circularized)
N50	3,620,742 nt
%GC	50.45%

Annotations Summary
Number of CDS	5712
Number of Hypothetical Proteins	330
Number of tRNA	93
Number of 5s rRNA	8
Number of 16s rRNA	7
Number of 23s rRNA	7

Input Reads Summary
Oxford Nanopore Read Count	12,478
Oxford Nanopore Median Q Score	26
Illumina Read Count	10,100,065
Illumina Mean Coverage Depth	239.797×
Illumina Median Q Score	34

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

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Sequencing Quality Control
Number of trimmed reads	10,100,065
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.97%
Estimated genome contamination	0.38%
Average depth of coverage	239.797×