Organism Summary | |
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Catalog Number | ATCC® 49386™ |
Strain Alias | NCTC 8029 [1360/48, CDN 378, CN 3320] |
Tags | Methylation Data |
Biosafety Level | 1 |
Type Strain | No |
Antigenic Properties | Lancefield's group O |
Assembly Summary | |
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Date Published | February 25, 2023 |
Length | 1,921,658 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 1,914,516 nt |
%GC | 40.11% |
Annotations Summary | |
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Number of CDS | 1848 |
Number of Hypothetical Proteins | 118 |
Number of tRNA | 61 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 222,613 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 6,422,839 |
Illumina Mean Coverage Depth | 459.981× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 6,422,839 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.82% |
Estimated genome contamination | 0.4% |
Average depth of coverage | 459.981× |