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  • Desulfovibrio
  • Desulfovibrio vulgaris

Desulfovibrio vulgaris (ATCC® 29579™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMay 14, 2019
Length3,772,782 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N503,570,489 nt
%GC63.28%
Organism Summary
NameATCC® 29579™
IsolationWealden clay
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS3,300
Number of Hypothetical Proteins1,688
Number of tRNA68
Number of 5s rRNA6
Number of 16s rRNA5
Number of 23s rRNA5
Input Reads Summary
Oxford Nanopore Read Count157,308
Oxford Nanopore Median Q Score14
Illumina Read Count7,785,978
Illumina Mean Coverage Depth380.42×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads7,785,978
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.41%
PassedEstimated genome contamination0%
PassedAverage depth of coverage380.42×
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