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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 15, 2021 |
| Length | 12,274,575 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 14 |
| Assembly Level | Scaffold |
| N50 | 970,118 nt |
| %GC | 34.49% |
| Organism Summary | |
|---|---|
| Name | ATCC® 58439™ |
| Isolation | Soil |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 721 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 219,132 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 16,887,998 |
| Illumina Mean Coverage Depth | 297.978× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads16,887,998
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness82.32%
PassedAverage depth of coverage297.978×
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