Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 13525™ |
| Strain Alias | NCTC 10038 [28/5, CCEB 546, DSM 50090, NCIB 9046, NCPPB 1964, PJ239, R. Hugh 818, R.Y. Stanier 192, Biotype A] |
| Isolation | Pre-filter tanks |
| Tags | MSA ComponentType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 20, 2019 |
| Length | 6,510,973 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 6,510,973 nt |
| %GC | 59.99% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5894 |
| Number of Hypothetical Proteins | 585 |
| Number of tRNA | 69 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 27,923 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 4,872,788 |
| Illumina Mean Coverage Depth | 145.064× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,872,788 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.86% |
| Estimated genome contamination | 0.52% |
| Illumina depth of coverage | 145.064× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline