ATCC® TSD-123™ | Teredinibacter franksiae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 10, 2025
Length	5,300,443 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (0 Circularized)
N50	2,762,999 nt
%GC	47.3%

Organism Summary
Name	ATCC® TSD-123™
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	4377
Number of Hypothetical Proteins	799
Number of tRNA	39
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	240,013
Oxford Nanopore Median Q Score	42
Illumina Read Count	7,017,094
Illumina Mean Coverage Depth	305.962×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads7,017,094

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

2 out of 3 passed, 1 requires inspection

PassedEstimated genome completeness91.79%

CautionEstimated genome contamination10.34%

PassedAverage depth of coverage305.962×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM contamination metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.

Teredinibacter franksiae (ATCC® TSD-123™)