ATCC® TSD-123™ | Teredinibacter franksiae

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® TSD-123™
Strain Alias	Bsc2
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	June 10, 2025
Length	5,300,443 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (0 Circularized)
N50	2,762,999 nt
%GC	47.3%

Annotations Summary
Number of CDS	4379
Number of Hypothetical Proteins	762
Number of tRNA	39
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	240,013
Oxford Nanopore Median Q Score	42
Illumina Read Count	7,017,094
Illumina Mean Coverage Depth	305.962×
Illumina Median Q Score	40

Most similar genomes

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

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Sequencing Quality Control
Number of trimmed reads	7,017,094
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	91.78%
Estimated genome contamination	10.34%
Illumina depth of coverage	305.962×
ONT depth of coverage	117.045×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM contamination metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.

Teredinibacter franksiae (ATCC® TSD-123™)