Organism Summary | |
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Catalog Number | ATCC® 785™ |
Strain Alias | 1467 |
Isolation | Nasal sinus of white rat |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | December 21, 2020 |
Length | 5,257,644 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (0 Circularized) |
N50 | 5,224,879 nt |
%GC | 68.1% |
Annotations Summary | |
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Number of CDS | 4943 |
Number of Hypothetical Proteins | 349 |
Number of tRNA | 54 |
Number of 5s rRNA | 3 |
Number of 16s rRNA | 3 |
Number of 23s rRNA | 3 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 132,959 |
Oxford Nanopore Median Q Score | 22 |
Illumina Read Count | 5,065,637 |
Illumina Mean Coverage Depth | 140.83× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 5,065,637 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 96.26% |
Estimated genome contamination | 0% |
Average depth of coverage | 140.83× |