Organism Summary | |
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Catalog Number | ATCC® BAA-2326™ |
Strain Alias | TY-2482 |
Isolation | Stool sample from patient with hemolytic uremic syndrome (HUS) |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | February 26, 2020 |
Length | 5,435,437 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 4 (2 Circularized) |
N50 | 5,277,264 nt |
%GC | 50.66% |
Annotations Summary | |
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Number of CDS | 5260 |
Number of Hypothetical Proteins | 268 |
Number of tRNA | 95 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 39,805 |
Oxford Nanopore Median Q Score | 16 |
Illumina Read Count | 3,653,116 |
Illumina Mean Coverage Depth | 125.194× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 3,653,116 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.93% |
Estimated genome contamination | 0.14% |
Average depth of coverage | 125.194× |