Organism Summary | |
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Catalog Number | ATCC® 62385™ |
Strain Alias | TUB Y-8 |
Isolation | Compost-enriched soil |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | December 12, 2022 |
Length | 20,565,796 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 7 (0 Circularized) |
N50 | 3,969,432 nt |
%GC | 48.95% |
Annotations Summary | |
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Number of BUSCO Annotations | 744 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 352,538 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 31,816,357 |
Illumina Mean Coverage Depth | 201.04× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 31,816,357 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 97.23% |
Average depth of coverage | 201.04× |