Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
- Alphacoronavirus 1
- Transmissible gastroenteritis virus, porcine
Transmissible gastroenteritis virus, porcine (ATCC® VR-1740™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | July 1, 2022 |
| Length | 28,529 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 28,529 nt |
| %GC | 37.68% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1740™ |
| Isolation | Small intestine of neonatal pig with porcine transmissible gastroenteritis. |
| Tags | |
| Biosafety Level | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 2,666,039 |
| Illumina Mean Coverage Depth | 377.131× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline