ATCC® TSD-482™ | NotFound | ATCC Genome Portal

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® TSD-482™
Isolation	Cerebrospinal fluid of a human patient at Northwestern Memorial Hospital in Chicago, IL.
Tags	Type Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	June 10, 2025
Length	6,211,780 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (2 Circularized)
N50	3,503,660 nt
%GC	60.19%

Annotations Summary
Number of CDS	5665
Number of Hypothetical Proteins	583
Number of tRNA	72
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	23,579
Oxford Nanopore Median Q Score	42
Illumina Read Count	5,159,882
Illumina Mean Coverage Depth	215.919×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	5,159,882
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.29%
Estimated genome contamination	1.74%
Illumina depth of coverage	215.919×
ONT depth of coverage	12.471×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions