Organism Summary | |
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Catalog Number | ATCC® 27315™ |
Strain Alias | PD-05141 [1277, NCIB 10778, NRRL B-3202, VAD-1277] |
Isolation | Urine |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | October 3, 2023 |
Length | 6,381,013 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 7 (0 Circularized) |
N50 | 4,747,268 nt |
%GC | 66.33% |
Annotations Summary | |
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Number of CDS | 5857 |
Number of Hypothetical Proteins | 489 |
Number of tRNA | 59 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 106,596 |
Oxford Nanopore Median Q Score | 13.6 |
Illumina Read Count | 9,759,238 |
Illumina Mean Coverage Depth | 217.53× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,759,238 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 95.13% |
Estimated genome contamination | 0.11% |
Average depth of coverage | 217.53× |
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions