Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 58438™ |
| Strain Alias | CBS 3082 [CCRC 21498, DBVPG 6177, IFO 1685, JCM 7257, NCYC 543, NRRL Y-12651, UCD 51-242] |
| Isolation | Fruit fly, Drosophila pinicola |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | October 30, 2020 |
| Length | 11,509,388 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 11 (0 Circularized) |
| N50 | 1,367,507 nt |
| %GC | 41.47% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 747 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 409,963 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 12,760,390 |
| Illumina Mean Coverage Depth | 245.816× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 12,760,390 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 91.29% |
| Average depth of coverage | 245.816× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline