ATCC® BAA-71™ | Citrobacter farmeri

Overview

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Quality Control

Assembly Summary
Date Published	June 10, 2025
Length	5,552,964 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	14 (1 Circularized)
N50	2,189,657 nt
%GC	53.06%

Annotations Summary
Number of CDS	5360
Number of Hypothetical Proteins	380
Number of tRNA	82
Number of 5s rRNA	7
Number of 16s rRNA	7
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	58,336
Oxford Nanopore Median Q Score	32
Illumina Read Count	9,638,400
Illumina Mean Coverage Depth	257.607×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	9,638,400
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.91%
Estimated genome contamination	4.81%
Illumina depth of coverage	257.607×
ONT depth of coverage	58.785×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions