Organism Summary | |
---|---|
Catalog Number | ATCC® BAA-245™ |
Isolation | Clinical specimen |
Tags | Type Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Antigenic Properties | Genomovar III |
Assembly Summary | |
---|---|
Date Published | March 27, 2020 |
Length | 7,770,648 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 14 (2 Circularized) |
N50 | 1,252,072 nt |
%GC | 66.84% |
Annotations Summary | |
---|---|
Number of CDS | 7118 |
Number of Hypothetical Proteins | 763 |
Number of tRNA | 68 |
Number of 5s rRNA | 6 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 9,034 |
Oxford Nanopore Median Q Score | 15 |
Illumina Read Count | 4,882,867 |
Illumina Mean Coverage Depth | 108.87× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 4,882,867 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 98.25% |
Estimated genome contamination | 0.04% |
Average depth of coverage | 108.87× |