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  • Rhizobium tropici

Rhizobium tropici (ATCC® 49672™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedApril 2, 2022
Length6,637,327 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs20 (1 Circularized)
Assembly LevelChromosome
N503,756,996 nt
%GC59.51%
Organism Summary
NameATCC® 49672™
IsolationNodules on Phaseolus vulgaris, Carmen de Viboral
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS6,292
Number of Hypothetical Proteins2,910
Number of tRNA47
Number of 5s rRNA0
Number of 16s rRNA3
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count6,321
Oxford Nanopore Median Q Score20
Illumina Read Count21,658,415
Illumina Mean Coverage Depth457.905×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads21,658,415
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness99.72%
PassedEstimated genome contamination0.28%
PassedAverage depth of coverage457.905×
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