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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 35,519,831 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 15 (0 Circularized) |
| N50 | 2,840,616 nt |
| %GC | 49.72% |
| Organism Summary | |
|---|---|
| Name | ATCC® 1015™ |
| Strain Name | A1144 3528.7 [ATCC 10582, CBS 113.46, IMI 31821, LSHB Ac4, NCTC 3858a, NRRL 1278, NRRL 328, NRRL 350, NRRL 511, TC 167] |
| Tags | |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 753 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 157,285 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 47,163,214 |
| Illumina Mean Coverage Depth | 188.702× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads47,163,214
PassedMedian Q score, all bases37
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness98.81%
PassedAverage depth of coverage188.702×
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