Organism Summary | |
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Catalog Number | ATCC® 15749™ |
Strain Alias | [D. Davis 368, DSM 653, IAM 12600, ICPB 3983, NCIB 11475] |
Isolation | Soil |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | March 24, 2025 |
Length | 6,874,567 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 8 (1 Circularized) |
N50 | 1,810,042 nt |
%GC | 67.53% |
Annotations Summary | |
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Number of CDS | 6312 |
Number of Hypothetical Proteins | 679 |
Number of tRNA | 55 |
Number of 5s rRNA | 2 |
Number of 16s rRNA | 2 |
Number of 23s rRNA | 2 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 31,262 |
Oxford Nanopore Median Q Score | 34 |
Illumina Read Count | 6,665,932 |
Illumina Mean Coverage Depth | 142.245× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 6,665,932 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.53% |
Estimated genome contamination | 1.4% |
Average depth of coverage | 142.245× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions