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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-260™ |
| Strain Alias | CDC 4012-00 [CIP 105566, JCM 8580, NIH 1485-79] |
| Isolation | Blood of diabetic patient |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 15, 2021 |
| Length | 4,736,269 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 9 (2 Circularized) |
| N50 | 2,858,744 nt |
| %GC | 55.44% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4437 |
| Number of Hypothetical Proteins | 218 |
| Number of tRNA | 86 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 119,693 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 19,945,506 |
| Illumina Mean Coverage Depth | 550.776× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 19,945,506 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 95.37% |
| Estimated genome contamination | 2.05% |
| Illumina depth of coverage | 550.776× |
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