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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 19860™ |
| Strain Alias | NCPPB 1011 [CCUG 15838, ICMP 3183, LMG 2117, PA 117] |
| Isolation | Corn leaves, Zea mays |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2021 |
| Length | 5,485,707 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| N50 | 5,483,763 nt |
| %GC | 68.83% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4815 |
| Number of Hypothetical Proteins | 484 |
| Number of tRNA | 52 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 21,068 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 21,784,668 |
| Illumina Mean Coverage Depth | 520.281× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 21,784,668 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.75% |
| Estimated genome contamination | 1.28% |
| Illumina depth of coverage | 520.281× |
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